【問題】STAR ultrafast universal RNA-seq aligner ?推薦回答
關於「STAR ultrafast universal RNA-seq aligner」標籤,搜尋引擎有相關的訊息討論:
STAR: ultrafast universal RNA-seq aligner - NCBI。
Results: To align our large (>80 billon reads) ENCODE Transcriptome RNA-seq dataset, we developed the Spliced Transcripts Alignment to a Reference (STAR) ...: 。
STAR: ultrafast universal RNA-seq aligner - PubMed。
STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013 Jan 1;29(1):15-21. doi: 10.1093/bioinformatics/bts635. Epub 2012 Oct 25.: 。
alexdobin/STAR: RNA-seq aligner - GitHub。
RNA-seq aligner. Contribute to alexdobin/STAR development by creating an account on GitHub.: 。
accurate and repeat tolerant realignment of RNA-seq reads。
Critically, RNA-seq aligners must be able to identify exonic alignments in regions that can be interspersed ... STAR: ultrafast universal RNA-seq aligner.。
HSRA: Hadoop-based spliced read aligner for RNA sequencing data。
2018年7月31日 · In RNA-seq experiments, the mapping of short reads to a reference genome or transcriptome is ... STAR: ultrafast universal RNA-seq aligner.。
Halvade-RNA: Parallel variant calling from transcriptomic data using ...。
2017年3月30日 · Because the RNA-seq variant calling pipeline involves two passes of the STAR aligner, it cannot be readily expressed in the Halvade ...。
TopHat2: accurate alignment of transcriptomes - Genome Biology。
2013年4月25日 · TopHat is a popular spliced aligner for RNA-sequence (RNA-seq) experiments. ... Gingeras TR: STAR: ultrafast universal RNA-seq aligner.。
[PDF] Web-based bioinformatics workflows for end-to-end RNA-seq data ...。
The third combines STAR, RSEM, and EdgeR ... are RNA-seq specific aligners, which are capable of identi- ... STAR: ultrafast universal RNA-seq aligner.。
Analysis of Whole Transcriptome Sequencing Data: Workflow and ...。
2015年12月31日 · Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 2013;29:15-21.。
A high-efficiency preprocessing tool for single-cell sequencing data ...。
2021年8月14日 · Recently, Rosenberg et al. developed a single-cell RNA-seq method, split-pool ligation-based ... STAR: ultrafast universal RNA-seq aligner.
常見STAR ultrafast universal RNA-seq aligner問答
延伸文章資訊kallisto, Salmon and. HISAT2 were more accurate than STAR (Tables 1-4), demonstrating that transc...
HISAT2 consistently had the largest junction validation rate on all samples, although it had fewe...
of mapped reads and the power of other software. In this way, the most important of these softwar...
'HISAT vs STAR'. Mina Parsania. MASTER'S THESIS. Leiden Institute of Advanced Computer Science (L...
We focused on two of the most popular sequence aligners, HISAT2 [12], and STAR [13], which supers...
Download scientific diagram | Performance of HISAT2 and STAR aligners on the breast cancer series...
However, STAR has a higher tolerance for more soft-clipped and mismatched bases compared to HISAT...
kallisto, Salmon and. HISAT2 were more accurate than STAR (Tables 1-4), demonstrating that transc...
HISAT2 consistently had the largest junction validation rate on all samples, although it had fewe...
of mapped reads and the power of other software. In this way, the most important of these softwar...
'HISAT vs STAR'. Mina Parsania. MASTER'S THESIS. Leiden Institute of Advanced Computer Science (L...
We focused on two of the most popular sequence aligners, HISAT2 [12], and STAR [13], which supers...
Download scientific diagram | Performance of HISAT2 and STAR aligners on the breast cancer series...
However, STAR has a higher tolerance for more soft-clipped and mismatched bases compared to HISAT...